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Details of Dr. Fabien JOUX   


Gender male
Job title Associate Professor, Director LOMIC
Department Microbial Ecology
Laboratoire d'Océanographie Microbienne (LOMIC, CNRS-UPMC) ( LOMIC)
Observatoire Océanologique de Banyuls Banyuls/mer 66650
Laboratoire d'Océanographie Microbienne (LOMIC, CNRS-UPMC) Observatoire Océanologique de Banyuls
Regions Sea of Azov
Tel +33.(0)
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Website http://lomic.obs-banyuls.fr
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Degree PhD
Job type Research
Research Area(s) Biological Oceanography, Marine Ecology , Biological Oceanography, Marine Ecology
Research Activities Control of the activity and diversity of marine microorganisms by various environmental factors (light, organic matter, pollutants. Use of marine microorganisms models, experiments with microbial communities and field studies
Research Region 2, 3, 25
Skills/Expertise microbial ecology, biogeochemistry, microbial physiology, microbial ecotoxicology
PUBLICATIONS (as reported by Dr. Fabien JOUX)

Doberva M., Ferandin Y., Intertaglia L., Joux F., Lebaron P., Lami R. (2014) Draft Genome Sequence of Maribius MOLA 401, a marine bacteria with a quorum sensing cell dependent physiology. Genome Annoucements. 2: e00997-14
Blanchet M., Pringaut O., Bouvy M. Catala P., Oriol L., Caparros J., Ortega E., Intertaglia L., West N., Agis M., Got P., Joux F.* (2014) Changes in bacterial community metabolism and composition during the degradation of dissolved organic matter from the jellyfish Aurelia aurita in a Mediterranean coastal lagoon. Environmental Science and Pollution Research DOI:10.1007/s11356-014-3848-x
Ortega-Retuerta E., Fichot C., Arrigo K., Joux F. (2014) Relationship between temperature and substrate on bacterial activity under a massive under-ice phytoplankton bloom in the Chukchi Sea. Deep-Sea Research II 105:74-84
Forest A., Babin M., Stemmann L., Picheral M., Sampei M., Fortier L., Gratton Y., Bélanger S., Devred E., Sahlin J., Doxaran D., Joux F., Ortega-Retuerta E., Jeffrey W.H., Martín J., Gasser B., J.C. Miquel J.C. (2013) Ecosystem function and particle flux dynamics across the Mackenzie Shelf (Beaufort Sea, Arctic Ocean): an integrative analysis of spatial variability and biophysical forcings. Biogeosciences 10:2833?2866
Matallana-Surget S., Cavicchioli R., Fauconnier C., Wattiez R., Leroy B., Joux F., Raftery M., Lebaron P. (2013) Dinitrophenylhydrazide redox proteomics: A new approach to identifying carbonylated proteins as biomarkers of UVB stress. PlosOne 8(7):e68112
Sanchez-Ferandin S., Leroy F., Bouget F-Y., Joux F. (2013) A new, sensitive marine microalgal recombinant biosensor using luminescence monitoring for toxicity testing of antifouling biocides. Applied Environmental Microbiology 79:631-638
Le Fouest V., Zakardjian B., Raimbault P., Xie H., Joux F., Babin M. (2013) Plankton ecosystem functioning and nitrogen fluxes in the oligotrophic waters of the Mackenzie Shelf, Arctic Ocean: a modeling study. Biogeosciences 10:4785-4800
Ortega-Retuerta E., Joux F., Jeffrey W.H., Ghiglione J-F. (2013) Spatial variability of particle-attached and free-living bacterial diversity in surface water from the Mackenzie River to the Beaufort Sea (Canadian Arctic). Biogeosciences 10:2747?2759
Ortega-Retuerta E., Jeffrey W.H., Ghiglione J-F., Joux F. (2012) Evidence of heterotrophic prokaryotic activity limitation by nitrogen in the Western Arctic Ocean during summer. Polar Biology. 35:785?794
Matallana-Surget S., Joux F., Wattiez R., Lebaron P. (2012) Proteome analysis of the UVB-resistant marine bacterium, Photobacterium angustum S14. PlosOne 7(8):e42299.
Matallana-Surget S., Villette C., Intertaglia L., Joux F., Lebaron P. (2012) Response to UVB radiation and oxidative stress of marine bacteria isolated from South Pacific Ocean and Mediterranean Sea. Journal of Photochemistry and Photobiology B: Biology 117:254?261
Ortega-Retuerta E., Jeffrey W.H., Babin M., Bélanger S., Benner R., Marie D., A. Matsuoka, Raimbault P., Joux F. (2012) Carbon fluxes in the Canadian Arctic: patterns and drivers of bacterial abundance, production and respiration on the Beaufort Sea margin. Biogeosciences 9:3679-3692
Auger P. A., Diaz F., Ulses C., Estournel C., Neveux J., Joux F., Pujo-Pay M., Naudin J-J. (2011) Functioning of the planktonic ecosystem of the Rhone River plume (NW Mediterranean) during spring and its impact on the carbon export: a field data and 3-D modelling combined approach. Biogeosciences 8:3231-3261
Durrieu de Madron X., ..., Joux F., et al. (93 authors) (2011) Marine ecosystems? responses to climatic and anthropogenic forcings in the Mediterranean by ?The MERMEX Group?. Progress in Oceanography. 91:97-166
Bertoni R., Jeffrey W.H., Conan P., Pujo-Pay M., Oriol L., Joux F. (2011) Influence of water mixing on the inhibitory effect of UV radiation on primary and bacterial production in Mediterranean coastal water. Aquatic Sciences. 73:377-387
Christodoulou S., Joux F., Marty J-C., Sempéré R., Rontani J.-F. (2010) Comparative study of UV and visible light induced degradation of lipids in non-axenic senescent cells of Emiliania huxleyi. Marine Chemistry 119:139-152
Matallana-Surget S., Douki T., Meador J., Cavicchioli R., Joux F. (2010) Influence of growth temperature and starvation state on survival and DNA damage induction in the marine bacterium Sphingopyxis alaskensis exposed to UV radiation. Journal of Photochemistry and Photobiology: B Biology 100:51-56
Vaughan P., Bullock A., Joux F., Jeffrey W.H. (2010) The effects of solar radiation on the stability of 3H-thymidine and 3H-leucine during bacterioplankton production measurements. Limnology Oceanography Methods 8:562-566
Tedetti M., Joux F., Charrière B., Mopper K., Sempéré S. (2009) Contrasting effects of solar radiation and nitrates on the biovailability of DOM to marine bacteria. Journal of Photochemistry and Photobiology A: Chemistry 201:243-247
Matallana-Surget S., Douki T., Cavicchioli R., Joux F. (2009) Remarkable resistance to UVB of the marine bacterium Photobacterium angsutum explained by an unexpected role of photolyase. Photochemistry and Photobiology Science 8:1313-1320
Christaki U., Courties C., Joux F., Jeffrey W.H., Neveux J., Naudin J-J. (2009) Community structure and trophic role of ciliates and heterotrophic nanoflagellates in Rhone River diluted mesoscale structures (NW Mediterranean Sea). Aquatic Microbial Ecology 57:236-277
Matallana-Surget S., Joux F., Raftery M., Cavicchioli R. (2009) The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics. Environmental Microbiology 10:2660-2675
Meador J.A., Baldwin A.J., Catala P., Jeffrey W.H., Joux F., Moss J.A., Pakulski J.D., Stevens R., Mitchell D.L. (2009) Sunlight-induced DNA damage in marine microorganisms collected along a latitudinal gradient from 70°N to 68°S. Photochemistry & Photobiology 85:412-420
Joux F., Jeffrey W.H., Abboudi M., Pujo-Pay M., Oriol L., Neveux J., Naudin J-J. (2009) Ultraviolet radiation in the Rhône lenses of low salinity and marine waters of the northwestern Mediterranean Sea: attenuation and effects on bacterial production and net community production. Photochemistry & Photobiology 85:783-793
Abboudi M., Matallana-Surget S., Rontani J.-F., Sempéré R., Joux F. (2008) Physiological alteration of the marine bacterium Vibrio angustum S14 exposed to simulated sunlight during growth. Current Microbiology. 57:412-417
Belviso S., Bopp L., Mosseri J., Tedetti M., Garcia N., Griffiths B., Joux F., Obernosterer I., Uitz J., Veldhuis M.J.W. (2008) Effect of natural iron fertilisation on the distribution of DMS and DMSP in the Indian sector of the Southern Ocean. Deep-Sea Research II 55:893-900
Matallana-Surget S., Meador J.A., Joux F., Douki T. (2008) Effect of the GC content of DNA on the distribution of UVB-induced bipyrimidine photoproducts. Photobiogical Photochemical Science. 7:794-801
Conan P., Joux F., Torréton J.-P., Pujo-Pay M., Douki T., Rochelle-Newall E., Mari X. (2008) Effect of solar ultraviolet radiation on bacterio- and phytoplankton activity in a large coral reef lagoon (SW New Caledonia). Aquatic Microbial Ecology. 52:83-98
Abboudi M., Jeffrey W.H., Ghiglione J.-F., Pujo-Pay M., Oriol L., Sempéré R., Charrière B., Joux F. (2008) Effects of photochemical transformations of dissolved organic matter on bacterial metabolism and diversity in three contrasting coastal sites in the northwestern Mediterranean Sea during summer. Microbial Ecology 55:344-357
Chaabane H., Vuillet E., Joux F., Lantoine F., Conan P., Cooper J.-F., Coste C.-M. (2007) Photodegradation of sulcotrione in aquatic environments and toxicity of its photoproducts for some marine microorganisms. Water Research. 41:1781-1789
Tedetti M., Kawamura K., Narukawa M., Joux F., Charrière B., Sempéré R. (2007) Hydroxyl radical-induced photochemical formation of dicarboxylic acids from unsaturated fatty acid (oleic acid) in aqueous solution. J. Photochem. Photobiol. A: Chem. 188:135-139
Pujo-Pay M., Conan P., Joux F., Oriol L., Naudin J.-J., Cauwet G. (2006) Impact of phytoplankton and bacterial production on nutrient and DOM uptake in the Rhône River plume (NW Mediterranean). Marine Ecology Progress Series 315:43-54
Joux F., Agogué H., Obernosterer I., Dupuy C., Reinthaler T., Herndl G.J., Lebaron P. (2006) Microbial community structure in the sea surface microlayer at two contrasting coastal sites in the Northwestern Mediterranean Sea. Aquatic Microbial Ecology 42:91-104
Baldwin A.J., Moss J.A., Pakulski J.D., Catala P., Joux F., Jeffrey W.H. (2005) Microbial diversity in a Pacific Ocean transect from the Arctic to Antarctic circles. Aquatic Microbial Ecology 41:91-102
Agogué H., Casamayor E.O., Bourrain M., Obernosterer I., Joux F., Herndl G.J., Lebaron P. (2005) A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems. FEMS Microbiology Ecology 54:269-280
Joux F., Servais P., Naudin J.-J., Lebaron P., Oriol L., Courties C. (2005) Distribution of picophytoplankton and bacterioplankton along a river plume gradient in the Mediterranean Sea. Vie Milieu 55:197-208
Agogué H., Joux F., Obernosterer I., Lebaron P. (2005) Resistance of marine bacterioneuston to solar radiation. Applied Environmental Microbiology 71:5282-5289
Agogué H., Casamayor E.O., Joux F., Obernosterer I., Dupuy C., Lantoine F., Catala P., Weinbauer M.G., Reinthaler T., Herndl G.J., Lebaron P. (2004) Comparison of samplers for the biological characterization of the sea surface microlayer. Limnology Oceanography Methods 2:213-225
Grémare A., Amouroux J.-M., Cauwet G., Charles F., Courties C., deBovée F., Dinet A., Devenon J.-L., Durrieu de Madron X., Fraunié P., Joux F., Lantoine F., Lebaron P., Naudin J.-J., Palanques A., Pujo-Pay M., Zudaire L. (2003) The effects of a strong winter storm on physical and biological variables at a shelf site in the Mediterranean. Oceanologica Acta. 26:407-419
Servais P., Agogué H., Courties C., Joux F., Lebaron P. (2001) Are the actively respiring cells (CTC+) those responsible of bacterial production in aquatic environments? FEMS Microbiology Ecology 35:171-179
Lebaron P., Agogué H., Courties C., Servais P., Joux F. (2001) Does the nucleic acid content of individual bacterial cells allow to discriminate the most active cells in aquatic environments? Applied Environmental Microbiology 67: 1775-1782
Joux F., Lebaron P. (2000) Use of fluorescent probes to assess physiological functions of bacteria at the single cell level. Microbial Infection 2:1523-1535
Bernard L., Schafer H., Joux F., Courties C., Muyzer G., Lebaron P. (2000) Genetic diversity of total, active and culturable marine bacteria in coastal waters. Aquatic Microbial Ecology 23:1-11
Joux F., W.H. Jeffrey, P. Lebaron, and D.L. Mitchell. [1999] Marine bacteria display diverse responses to ultraviolet-B radiation. Applied Environmental Microbiology 65:3820-3827.
Troussellier, M., J.-L. Bonnefont, C. Courties, A. Derrien, E. Dupray, M. Gauthier, M. Gourmelon, F. Joux, P. Lebaron, Y. Martin, and M. Pommepuy. [1998] Responses of enteric bacteria to environmental stresses in seawater. Oceanologica Acta 21:965-981.
Lebaron, P., P. Catala, C. Fajon, F. Joux, L. Bernard, and J. Baudard [1997]. A new sensitive whole-cell hybridization technique for detection of bacteria involving a biotinylated oligonucleotidic targeting rRNA and tyramide signal amplification. Applied Environmental Microbiology 63: 3274-3278.
Joux, F. Lebaron, P. and Troussellier M. [1997] Changes in cellular states of the marine bacterium Deleya aquamarina under starvation conditions. Applied Environmental Microbiology 63: 2686-2694.
Joux F., and P. Lebaron [1997]. Ecological implication of an improved direct viable count method for aquatic bacteria. Applied Environmental Microbiology 63: 3643-3647.
Joux, F., Lebaron, P. and Troussellier M. [1997] Succession of cellular states in a Salmonella typhimurium population during starvation in artificial seawater microcosms. FEMS Microbiology Ecology 22: 65-76.
Lebaron, P. and Joux, F. [1994] Flow cytometric analysis of the cellular DNA content of Salmonella typhimurium and Alteromonas haloplanktis during starvation and recovery in seawater. Applied Environmental Microbiology 60: 4345-4350.

Created: 2000-03-06 Last Updated: 2015-07-06 by Fabien JOUX