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Details of Dr. Youlian Pan   


PERSONAL DATA

Gender male
Job title Research Officer (=Research Scientist)
Department Information and Communications Technologies
Institution
National Research Council Canada (
1200 Montreal Road Ottawa K1A 0R6
Address
1200 Montreal Road
Ottawa
Ontario
K1A 0R6
Tel (1)(613)993 0853
Fax (1)(613)952 0215
Email
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Website http://www.nrc-cnrc.gc.ca/, http://www.nrc-cnrc.gc.ca/eng/people/pan_youlian_4663.html
Social Media Links
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PROFESSIONAL DATA

Degree Ph.D. M.Sc. B.Sc.
Job type Research
Research Area(s) Biological Oceanography, Marine Ecology , Marine Biotechnology, Marine Products , Pollution , Biological Oceanography, Marine Ecology , Marine Biotechnology, Marine Products , Pollution
Research Activities Artificial intelligence, Gene expression, Gene prediction, Genomics, Transcriptomics, Marine biology, especially phytoplankton physiology and ecology; photosynthesis; nutrient dynamics; cellular chemical composition and toxin production of Pseudo-nitzschia, Dinophysis, Prorocentrum, Alexandrium spp.; Dinophysis norvegica; Prorocentrum spp.; Alexandrium spp.; Scripsiella trochoidea; Gymnodinium breve; Algacidal bacteria; Domoic acid (DA); diarrhetic shellfish poisoning (DSP); paralytic shellfish poisoning (PSP);
Research Region 53, 54, 55
Skills/Expertise Data mining, Machine learning, System modeling, Genomics, Transcription regulation, Physiology, Ecology, and Systems Biology
PUBLICATIONS (as reported by Dr. Youlian PAN)

Tulpan D, Leger S, Tchagang A, Pan Y (2015). Enrichment of Triticum aestivum gene annotations using ortholog cliques and gene ontologies in other plants. BMC Genomics, 16:299.
Tchagang AB, Famili F, and Pan Y (2014). Subspace-clustering of DNA Microarray Data: Theory, Evaluation, and Applications. International Journal of Computational Models and Algorithms in Medicine (IJCMAM) 4:2.
Wang Y and Pan Y (2014) Semi-supervised consensus clustering for gene expression data analysis. BioData Mining 7:7.
Tchagang AB, Phan S, Famili F, Pan Y, Cutler AJ and Zou J (2013). A generic model of transcriptional regulatory networks: application to plants under abiotic stress. In: Proceedings of the IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS 2013), November 17?19, 2013 ? Houston, Texas, USA.
Tchagang AB, Y Pan, F Famili, AH Tewfik, and PV Benos (2013). Biclustering of DNA microarray data: theory, evaluation, and applications. In: Bioinformatics: Concepts, Methodologies, Tools, and Applications Chapter 29, IGI Global, pp 513-551.
Tchagang AB, S Phan, F Famili, H Shearer, P Fobert, Y Huang, J Zou, D Huang, A Cutler, Z Liu, and Y Pan (2012) Mining biological information from 3D short time-series gene expression data: the OPTricluster algorithm. BMC Bioinformatics 13:54.
Doan DD, Y Wang, Y Pan (2011). Utilization of gene ontology in semi-supervised clustering. In: Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, April 11-15, 2011, Paris.
Tchagang AB, Y Pan, F Famili, AH Tewfik, and PV Benos (2011). Biclustering of DNA microarray data: theory, evaluation, and applications. In: LA Liu, D. Wei, Y. Li, and H Lei (eds.) Handbook of Research on Computational and Systems Biology: Interdisciplinary Applications Chapter 7, pp. 148-186. IGI Global.
Famili F, S Phan, Z Liu and Y Pan (2010). The impact of gene expression analysis on the classification and prediction of patients? medical conditions. ICDM 2010. In Proceedings of Industrial Conference on Data Mining (ICDM 2010), July 11-14, Berlin, Germany.
Pan Y, AB Tchagang, H Bérubé, S Phan, H Shearer, Z Liu, P Fobert, and F Famili (2010). Integrative data mining in functional genomics of Brassica napus and Arabidopsis thaliana. In: Proceedings of 23rd International Conference on Industrial, Engineering & Other Applications of Applied Intelligent Systems (IEA-AIE 2010) ? special session on ?New Frontiers in Data Analysis, Optimization and Visualization for Bioinformatics and Neuroscience?, June 1-4, Córdoba, Spain. pp. 91-101.
Tchagang AB, A Gawronski, H Bérubé, S Phan, F Famili, and Y Pan (2010). GOAL: A software tool for assessing biological significance of genes group. BMC Bioinformatics 11: 229.
Famili F, S Phan, F Fauteux, Z Liu and Y Pan (2010). Data Integration and Knowledge Discovery in Life Sciences. In: Proceedings of 23rd International Conference on Industrial, Engineering & Other Applications of Applied Intelligent Systems (IEA-AIE 2010) ? special session on ?New Frontiers in Data Analysis, Optimization and Visualization for Bioinformatics and Neuroscience?, June 1-4, Córdoba, Spain. pp. 102-111.
Pan Y, S Phan, F Famili, ML Jaramillo, AEG Lenferink, E Wang (2010). Differences in promoters of orthologous genes. The Open Bioinformatics Journal 4: 41-49.
Liu Z, S Phan, F Famili, Y Pan, AEG Lenferink, C Cantin, C Collins, MD. O?Connor-Mccourt (2010). A multi-strategy approach to informative gene identification from gene expression data. Journal of Bioinformatics and Computational Biology 8: 19-23.
Tchagang AB, H Shearer, S Phan, H Bérubé, F Famili, P Fobert, and Y Pan (2010). Towards a temporal modeling of the genetic network controlling systemic acquired resistance in Arabidopsis thaliana. In: Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, May 2-5, 2010, Montreal. pp. 12-19.
Pan Y, J Zou, Y Huang, Z Liu, S Phan and FA Famili (2009). Goal driven analysis of cDNA microarray data. Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2009), March 30-April 2, Nashville, TN, USA. pp.186-192.
Tchagang A, H Bérubé, Z Liu, S Phan, F Famili and Y Pan (2009). Towards the reconstruction of Brassica napus seed development FA metabolism dynamic regulatory map. In: Proceedings of the IEEE International Workshop on Genomic Signal Processing and Statistics, May 17 ?21, Minneapolis, Minnesota, USA. NRC 50780.
Pan Y and S Phan (2008). Positional weight matrix as a sequence motif detector. In M.K. Moretti and L.J. Rizzo (eds.) Oligonucleotide Array Sequence Analysis. (ISBN: 978-1-60456-542-3), Chapter 15, Nova Science Publishers. pp. 421-440.
Pan Y, S Phan (2008). Threshold for positional weight matrix. Engineering Letters 16(4): 498-504. (ISSN: 1816-0948)
Phan S, F Famili, Z Tang, Y Pan, Z Liu, J Ouyang, A Lenferink and M Mc-Court O?connor (2007). A novel pattern based clustering methodology for time-series microarray data. Journal of Computer Mathematics 84(5): 585 ? 597.
Cui Q, Z Yu, Y Pan, EO Purisimaa and E Wang (2007). MicoRNAs preferentially target the genes with high transcriptional regulation complexity. Biochemical and Biophysical Research Communications 352: 733?738.
Smith B, H Fang, Y Pan, PR Walker, AF Famili and M Sikorska (2007). Evolution of motif variants and positional bias of the cyclic-AMP response element. BMC Evolutionary Biology 7(Suppl 1):S15.
Blum I, DV Subba Rao, Y Pan, S Swaminathan and NG Adams (2006). Development of statistical models for prediction of the neurotoxin domoic acid levels in the pennate diatom Pseudo-nitzschia multiseries utilizing data from cultures and natural blooms. In: D V Subba Rao (ed), Algal Cultures, Analogues Of Blooms And Applications, vol.2, Chapter 25, Science Publishers Inc. Enfield, New Hampshire, USA, ISBN 1-57808-393-1, pages 891-916.
Pan Y (2006). Advances in the Discovery of cis-Regulatory Elements. Current Bioinformatics 1: 321-336.
Subba Rao DV, Y Pan and F Al-Yamani (2005). Growth and photosynthetic rates of Chlamydomonase plethora and Nitzschia frustula cultures isolated from Kuwait Bay, Arabian Gulf, and their potential as live algal food for tropical mariculture. Marine Ecology 26: 63-71.
Pan Y and CW Sensen (2005). Modular neural networks and their application in exon prediction. In: M He, G Narasimhan and S Petoukhov (eds), Mathematical Biology and Medicine Vol 8: Advances in Bioinformatics and its Applications. World Scientific Publishing Co. Pte. Ltd., Singapore. ISBN 981-256-148-X. pp. 47-61.
Pan Y, M Parsons, M Busman, P Moeller, Q Dortch and G Doucette, (2001). Pseudo-nitzschia sp. cf. pseudodelicatissima ? a confirmed producer of domoic acid from the northern Gulf of Mexico. Mar. Ecol.Prog. Ser. 220: 83-92.
Tester PA, Y Pan and GJ Doucette (2001). Accumulation of domoic acid activity in copepods. In: GM Hallegraeff, SI Blackburn, CJ Bolch and RJ Lewis (eds), Harmful Algal Blooms 2000. IOC-UNESCO, Paris. pp. 418-420
Pan Y, AD Cembella and MA Quilliam (1999). The cell cycles and toxin production in the benthic dinoflagellate Prorocentrum lima. Marine Biology 134:541-549.
Subba Rao DV, F Al-Yamani, A Lennox, Y Pan and TFO Al-said (1999). Biomass and production characteristics of the red tide noticed in Kuwait Bay, Arabian Gulf. J. Plankton Res. 21: 805-810.
Pan Y and AD Cembella (1998). Flow cytometric determination of cell cycles and growth rates of Prorocentrum spp. In: B Reguera, J Blano, ML Fernandes and T Wyatt (eds), Harmful Microalgae. Xunta de Galicia and Intergovernmental Oceanographic Commission of UNESCO, Vigo and Copenhagen. pp. 173-176.
Subba Rao DV, Y Pan and K Mukhida (1998). Production of domoic acid by Pseudo-nitzschia multiseries Hasle, affected by lithium. PSZN Marine Ecology. 19:31-36.
Pan Y, SS Bates and AD Cembella (1998). Environmental stresses and domoic acid production by Pseudo-nitzschia, a physiological perspective. Natural Toxins 6: 127-135.
Pan Y and DV Subba Rao (1997). Impacts of domestic sewage effluent on phytoplankton from Bedford Basin, eastern Canada. Mar. Pollution Bull. 35: 1001-1005.
Pan Y, DV Subba Rao and KH Mann (1996). Changes in domoic acid production and cellular chemical composition of the toxigenic diatom Pseudo-nitzschia multiseries under phosphate limitation. J. Phycol. 32(3): 371-381.
Pan Y, DV Subba Rao and KH Mann (1996). Acclimation to low light in photosynthesis and growth of Pseudo-nitzschia multiseries (Hasle), a neurotoxigenic diatom. J. Plankt. Res. 18: 1427-1438.
Subba Rao DV and Y Pan (1996). Photosynthetic rates of Dinophysis norvegica. Eur. J. Phycol. 31: 381.
Pan Y, DV Subba Rao, KH Mann, RG Brown and R Pocklington (1996). Effects of silicate limitation on production of domoic acid, a neurotoxin, by the diatom Pseudo-nitzschia multiseries (Hasle). I. Batch culture studies. Mar. Ecol. Prog. Ser. 131: 225-233.
Pan Y, DV Subba Rao, KH Mann, WKW Li and WG Harrison (1996). Effects of silicate limitation on production of domoic acid, a neurotoxin, by the diatom Pseudo-nitzschia multiseries (Hasle). II. Continuous culture studies. Mar. Ecol. Prog. Ser. 131: 235-243.
Pan Y, YC Guo and CK Tseng (1995). Annual in situ primary production in the inlet of Jiaozhou Bay. Oceanologia et Limnologia Sinica 26: 309-316.
Pan Y, YC Guo and CK Tseng (1995). Vertical and seasonal variations of chlorophyll concentrations in the inlet of Jiaozhou Bay. Oceanologia et Limnologia Sinica 26: 22-27.
Subba Rao DV and Y Pan (1995). Apart from toxin production, are the toxigenic algae physiologically different? In: P Lassus, G Arzul, E Erard, P Gentien and C Marcaillou (eds), Harmful Marine Algal Blooms. Lavoisier, Paris, pp. 675-680.
Subba Rao DV, Y Pan and SJ Smith (1995). Allelopathy between Rhizosolenia alata (Brightwell) and the toxigenic Pseudonitzschia pungens f. multiseries (Hasle). In: P Lassus, G Arzul, E Erard, P Gentien and C Marcaillou (eds), Harmful Marine Algal Blooms. Lavoisier, Paris. pp. 681-686.
Pan Y, DV Subba Rao, KH Mann, WKW Li and RE Warnock (1993). Temperature dependence of growth and carbon assimilation in Nitzschia pungens f. multiseries, the causative diatom of domoic acid poisoning. In: TJ Smayda and Y Shimizu (eds), Toxic Phytoplankton Blooms in The Sea. Elsevier, Amsterdam, pp. 619-624.
Subba Rao DV, Y Pan, V Zitko, G Bugden and K Mackeigan (1993). Diarrhetic shellfish poisoning (DSP) associated with a subsurface bloom of Dinophysis norvegica in the Bedford Basin, eastern Canada. Mar. Ecol. Prog. Ser. 97: 117-126.
Subba Rao DV and Y Pan (1993). Photosynthetic characteristics of Dinophysis norvegica, Claparede & Lachmann, a red-tide dinoflagellate. J. Plankton Res. 15: 965-976.
Guo Y and Y Pan (1992). Primary productivity in the Changjiang River estuary. Studia Marina Sinica 33: 191-200.
Pan Y, YC Guo and CK Tseng (1992). Carbon assimilation number of phytoplankton. In: R Liu (ed), Ecology and Living Resources of Jiaozhou Bay. Science Press, Beijing, China. pp. 215-224.
Amadi I, DV Subba Rao and Y Pan (1992). A Gonyaulax digitale red water bloom in the Bedford Basin, Nova Scotia, Canada. Botanica Marina 35, 451-455.
Pan Y, DV Subba Rao and RE Warnock (1991). Photosynthesis and growth of Nitzschia pungens f. multiseries Hasle, a neurotoxin producing diatom. J. Exp. Mar. Biol. Ecol. 154, 77-96.
Pan Y (1987). An analysis of annual observation data on transparency and submarine illumination at two stations in Jiaozhou Bay. Marine Sciences 1987(3): 49-53.
Pan Y (1987). On chlorophyll and marine primary productivity. Marine Sciences 1987(1): 63-65.

Group(s): habdir
Created: 1997-06-06 Last Updated: 2016-06-16 by Youlian PAN